I did the apt-get update and upgrade the latest pluto-boot-scripts got installed but mysql dhcp bind are not starting.
getting a weird permission denied as if some sort of selinux or apparmor wasn't happy with them starting.
It is very well possible, that your system got thrashed beyond repair. When the pluto-system-database is being updated, the postinst script of the deb file checks to see, if it gets results from the current pluto_main database. I imagine that the postinst script did not successfully detect a running pluto_main database, and therefore installed a new one. And due to that fact did some more weird stuff. You might want to drop into IRC #linuxmce-devel, where we can talk about the problem.
I assume, you are using MythTV aren't you?!