except in the synchronize area, where it says the directories that hold the files are 'on disk' but not in the database, and the files within the directories themselves are 'in the database,' but not 'on disk.'
It's a bug in the routine who extract the files from physical directory who appear for directories with spaces or quotes in names. To fix this, edit /var/www/pluto-admin/include/utils.inc.php and replace line 847:
exec('find '.$PathParm.' '.$fileParm.' -maxdepth 1',$retArray);
exec('find "'.$PathParm.'" '.$fileParm.' -maxdepth 1',$retArray);
Sorry about that,